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Submissions from 2011

Potential Enhancement of Biofuel Production through Enzymatic Biomass Degradation Activity and Biodiesel Production by Halophilic Microorganisms, Matthew B. Begemann, Melanie R. Mormile, Varun G. Paul, and Daniel J. Vidt

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Complete Genome Sequence of the Haloalkaliphilic, Hydrogen-Producing Bacterium Halanaerobium hydrogeniformans, Steven D. Brown, Matthew B. Begemann, Melanie R. Mormile, Judy D. Wall, Cliff S. Han, Lynne A. Goodwin, Samuel Pitluck, Miriam Land, Loren J. Hauser, and Dwayne A. Elias

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Inducing Sleep by Remote Control Facilitates Memory Consolidation in Drosophila, Jeffrey Donlea, Matthew S. Thimgan, Yasuko Suzuki, Laura Gottschalk, and Paul J. Shaw

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Activity-Based Metagenomic Screening and Biochemical Characterization of Bovine Ruminal Protozoan Glycoside Hydrolases, Seth D. Findley, Melanie R. Mormile, Andrea Sommer-Hurley, Xuecheng Zhang, Peter A. Tipton, Krista L. Arnett, James H. Porter, Monty S. Kerley, and Gary N. Stacey

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Functional Analysis of the nifQdctA1y4vGHIJ Operon of Sinorhizobium fredii Strain NGR234 Using a Transposon with a NifA-Dependent Read-Out Promoter, Coralie Fumeaux, Nadia Bakkou, Joanna Kopcinska, Wladyslaw X. X. Golinowski, David J. Westenberg, Peter Muller, and Xavier Perret

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A General Life History Theory for Effects of Caloric Restriction on Health Maintenance, Chen Hou, Kendra Bolt, and Aviv Bergman

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A General Model for Ontogenetic Growth under Food Restriction, Chen Hou, Kendra Bolt, and Aviv Bergman

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Energetic Basis of Correlation Between Catch-Up Growth, Health Maintenance, and Aging, Chen Hou, Kendra Bolt, and Aviv Bergman

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Pulmonary Diffusional Screening and the Scaling Laws of Mammalian Metabolic Rates, Chen Hou and Michael Mayo

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A Gene Delivery System for Human Cells Mediated by Both a Cell-Penetrating Peptide and a PiggyBac Transposase, Cheng-Yi Lee, Jheng-Fong Li, Ji-Sing Liou, Yuh-Chyang Charng, Yue-wern Huang, and Han-Jung Lee

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Protein Secondary Structure Prediction using BLAST and Relaxed Threshold Rule Induction from Coverings, Leong Lee, Jennifer Leopold, and Ronald L. Frank

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Intracellular Delivery of Quantum Dots Mediated by a Histidine- and Arginine-rich HR9 Cell-penetrating Peptide through the Direct Membrane Translocation Mechanism, Betty R. Lui, Yue-wern Huang, Jeffrey G. Winiarz, Huey-Jenn Chiang, and Han-Jung Lee

Correlation of Metal Oxide Nanoparticle Physicochemical Properties with Cytotoxicity, Shravan Mallavarapu, Charles C. Chusuei, Chi-Heng Wu, and Yue-Wern Huang

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MicroRNA Profiling Reveals Age-Dependent Differential Expression of Nuclear Factor B and Mitogen-Activated Protein Kinase in Adipose and Bone Marrow-Derived Human Mesenchymal Stem Cells, Amitabh C. Pandey, Julie A. Semon, Deepak Kaushal, Regina P. O'Sullivan, Julie Glowacki, Jeffrey M.. Gimble, and Bruce A. Bunnell

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Ecological and Genetic Assessment of Spatial Structure among Replicate Contact Zones between Two Topminnow Species, Jacob F. Schaefer, David D. Duvernell, and Brian R. Kreiser

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Shape Variability in Topminnows (Fundulus Notatus Species Complex) Along the River Continuum, Jacob F. Schaefer, David D. Duvernell, and Brian R. Kreiser

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Changes in Gene Expression with Sleep, Matthew S. Thimgan, Stephen P. Duntley, and Paul J. Shaw

Submissions from 2010

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Permanent Genetic Resources Added to Molecular Ecology Resources Database 1 April 2010 - 31 May 2010, K. Andree; Jan Axtner; Mark J. Bagley; David D. Duvernell; and For full list of authors, see publisher's website.

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Preparation and In Vitro Evaluation of Bioactive Glass (13-93) Scaffolds with Oriented Microstructures for Repair and Regeneration of Load-Bearing Bones, Qiang Fu, M. N. Rahaman, B. Sonny Bal, and Roger F. Brown

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Heavy Metals: Confounding Factors in the Response of New Zealand Freshwater Fish Assemblages to Natural and Anthropogenic Acidity, Hamish S. Greig, Dev Niyogi, Kristy L. Hogsden, Phillip G. Jellyman, and Jon S. Harding

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Reverse Engineering of Oxygen Transport in the Lung: Adaptation to Changing Demands and Resources through Space-Filling Networks, Chen Hou, Stefan Gheorghiu, Virginia H. Huxley, and Peter Pfeifer

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Energetic Basis of Colonial Living in Social Insects, Chen Hou, Michael Kaspari, Hannah B. Vander Zanden, and James F. Gillooly

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Oxidative Stress, Calcium Homeostasis, and Altered Gene Expression in Human Lung Epithelial Cells Exposed to ZnO Nanoparticles, Chuan-Chin Huang, Robert Aronstam, Da-Ren Chen, and Yue-wern Huang

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Heavy Metals, Hematology, Plasma Chemistry, and Parasites in Adult Hellbenders (Cryptobranchus Alleganiensis), Chuanchin Huang, Yi Xu, Jeffrey T. Briggler, Michael J. McKee, Paul Ki-souk Nam, and Yue-Wern Huang

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Toxicity of Transition Metal Oxide Nanoparticles: Recent Insights from in vitro Studies, Yue-Wern Huang, Chi-Heng Wu, and Robert Aronstam

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A Framework for Automated Enrichment of Functionally Significant Inverted Repeats in Whole Genomes, Cyriac Kandoth, Fikret Erçal, and Ronald L. Frank

Macropinocytosis: Possible Mechanisms of Cellular Entry of Arginine-Rich Intracellular Delivery Peptides, Betty Revon Liu, Ching-Yi Chen, Rong-Long Chen, Huey-Jenn Chiang, Yue-Wern Huang, and Han-Jung Lee

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Cell-Penetrating Peptide-Functionalized Quantum Dots for Intracellular Delivery, Betty Revon Liu, Yue-Wern Huang, Huey-Jenn Chiang, and Han-Jung Lee

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Cellular Internalization of Quantum Dots Noncovalently Conjugated with Arginine-Rich Cell-Penetrating Peptides, Betty Revon Liu, JhengFong Li, Shuwan Lu, Han Jung Lee, Yue-Wern Huang, Katie Shannon, and Robert Aronstam

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Nutrient Flux, Uptake, and Transformation in a Spring-fed Stream in the Missouri Ozarks, USA, Dev Niyogi, Janet M. Bandeff, Cem Selman, and Drew E. Menke

Electricity Generation using Iron-Reducing, Haloalkaliphilic Bacteria, Varun G. Paul and Melanie R. Mormile

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Integrin Expression and Integrin-Mediated Adhesion in vitro of Human Multipotent Stromal Cells (MSCs) to Endothelial Cells from Various Blood Vessels, Julie A. Semon, Lauren H. Nagy, Claire B. Llamas, H. Alan Tucker, Ryan Hwa Lee, and Darwin J. Prockop

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The Perilipin Homologue, Lipid Storage Droplet 2, Regulates Sleep Homeostasis and Prevents Learning Impairments following Sleep Loss, Matthew S. Thimgan, Yasuko Suzuki, Laurent Seugnet, Laura Gottschalk, and Paul J. Shaw

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Extremophiles -- A Source of Innovation for Industrial and Environmental Applications, Sonia M. Tiquia-Arashiro and Melanie R. Mormile

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Zinc Oxide Nanoparticle Disruption of Store-Operated Calcium Entry in a Muscarinic Receptor Signaling Pathway, Hsiu-Jen Wang, Anna C. Growcock, Tso-Hao Tang, Jennifer O'Hara, Yue-Wern Huang, and Robert Aronstam

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Biodegradable Rare Earth Lithium Aluminoborate Glasses for Brachytherapy Use, James E. White, D. E. Day, Roger F. Brown, and Gary J. Ehrhardt

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Nona-Arginine Facilitates Delivery of Quantum Dots into Cells Via Multiple Pathways, Yi Xu, Betty Revon Liu, Han Jung Lee, Katie Shannon, Jeffrey G. Winiarz, Tien-Chun Wang, Huey-Jenn Chiang, and Yue-Wern Huang

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The Effect of Baihu Decoction on Blood Glucose Levels in Treating Systemic Inflammatory Response Syndrome, Fang Yang and Chen Hou

Submissions from 2009

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Autophagy Is Enhanced and Floral Development Is Impaired in AtHVA22d RNAi Arabidopsis, Nathan Chen, Hau-Ren Chen, Su-Ying Yeh, Gina Vittore, and Tuan-Hua David Ho

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In Vitro Cellular Response to Hydroxyapatite Scaffolds with Oriented Pore Architectures, Qiang Fu, B. Sonny Bal, Roger F. Brown, and M. N. Rahaman

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Proliferation and Function of MC3T3-E1 Cells on Freeze-cast Hydroxyapatite Scaffolds with Oriented Pore Architectures, Qiang Fu, B. Sonny Bal, Roger F. Brown, and M. N. Rahaman

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Fluidic Biosensors with Integrated Surface Bound Hydrogel Sensing Elements, Zhan Gao, Chang-Soo Kim, and David Henthorn

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Livestock Hormones in Aquatic Ecosystems, Yue-Wern Huang, Dev Niyogi, Paul Ki-souk Nam, and Janet M. Bandeff

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Biofilm Bacterial Community Structure in Streams Affected by Acid Mine Drainage, Gavin Lear, Dev Niyogi, Yimin Dong, Gillian Lewis, and Jon S. Harding

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Protein Secondary Structure Prediction using Parallelized Rule Induction from Coverings, Leong Lee, Cyriac Kandoth, Jennifer Leopold, and Ronald L. Frank

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Protein Secondary Structure Prediction using Rule Induction from Coverings, Leong Lee, Jennifer Leopold, Ronald L. Frank, and Anne M. Maglia

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Toxicity of Nano- and Micro-sized ZnO Particles in Human Lung Epithelial Cells, Weisheng Lin, Yi Xu, Chuan-Chin Huang, Yinfa Ma, Katie Shannon, Da-Ren Chen, and Yue-wern Huang

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Molecular Analysis of the Microbial Communities of Mars Analog Lakes in Western Australia, Melanie R. Mormile, Bo-Young Hong, and Kathleen C. Benison

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Litter Breakdown and Fungal Diversity in a Stream Affected by Mine Drainage, Dev Niyogi, Cory A. Cheatham, William H. Thomson, and Jessica M. Christiansen

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Proposal Writing from Three Perspectives: Technical Communication, Engineering, and Science, Kathryn M. Northcut, Mariesa Crow, and Melanie R. Mormile

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Bub2 Regulation of Cytokinesis and Septation in Budding Yeast, Su Young Park, Addie E. Cable, Jessica Blair, Katherine E. Stockstill, and Katie Shannon

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Skeletal Morphogenesis of the Vertebral Column of the Miniature Hylid Frog Acris Crepitans, with Comments on Anomalies, Analia Pugener and Anne M. Maglia

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Nanostructured Bioactive Glass Scaffolds for Bone Repair, M. N. Rahaman, D. E. Day, Roger F. Brown, Qiang Fu, and Steve Jung

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Patterns of Co-Existence and Hybridisation between Narrowly Endemic (Fundulus Euryzonus) and Broadly Distributed (F. Olivaceus) Topminnows in a Riverine Contact Zone, Jacob F. Schaefer, Brian R. Kreiser, Charles Champagne, Paul M. Mickle, and David D. Duvernell

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Identifying Sleep Regulatory Genes using a Drosophila Model of Insomnia, Laurent Seugnet, Yasuko Suzuki, Matthew S. Thimgan, Jeffrey Donlea, Sarah I. Gimbel, Laura Gottschalk, Stephen P. Duntley, and Paul J. Shaw

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N-Acetylcysteine Amide Decreases Oxidative Stress but Not Cell Death Induced by Doxorubicin in H9c2 Cardiomyocytes, Rong Shi, Chuan-Chin Huang, Robert Aronstam, Nuran Ercal, Adam Martin, and Yue-Wern Huang

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Study of Uptake and Loss of Silica Nanoparticles in Living Human Lung Epithelial Cells at the Single Cell Level, Isaac Stayton, Jeffrey G. Winiarz, Katie Shannon, and Yinfa Ma

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Occurrence of Camponotus Pennsylvanicus (Hymenoptera: Formicidae) in Trees Previously Infested with Enaphalodes Rufulus (Coleoptera: Cerambycidae) in the Ozark Mountains of Arkansas, Robin M. Verble and Fred M. Stephen

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Occurrence of Carpenter Ants in Ozark Forests in Relation to Prescribed Fire and Stand Variables, Robin M. Verble and Fred M. Stephen

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Response to Comments on "Energy Uptake and Allocation During Ontogeny", Wenyun Zuo, Melanie E. Moses, Chen Hou, William H. Woodruff, Geoffrey B. West, and James H. Brown

Submissions from 2008

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Erratum: Recommended Minimal Standards for Describing New Taxa of the Family Halomonadaceae, David R. Arahal; Russell H. Vreeland; Carol D. Litchfield; Melanie R. Mormile; Brian J. Tindall; and For full list of authors, see publisher's website.

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"Hairy Blobs:" Microbial Suspects Preserved in Modern and Ancient Extremely Acid Lake Evaporites, Kathleen C. Benison, Elliot A. Jagniecki, Tina B. Edwards, Melanie R. Mormile, and Michael C. Storrie-Lombardi

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Active Hematite Concretion Formation in Modern Acid Saline Lake Sediments, Lake Brown, Western Australia, Brenda Beitler Bowen, Kathleen Counter Benison, Francisca Oboh-Ikuenobe, Stacy L. Story, and Melanie R. Mormile

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Periphyton Communities in New Zealand Streams Impacted by Acid Mine Drainage, Jonathan P. Bray, Paul A. Broady, Dev Niyogi, and Jon S. Harding

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Growth and Differentiation of Osteoblastic Cells on 13-93 Bioactive Glass Fibers and Scaffolds, Roger F. Brown, D. E. Day, Thomas E. Day, Steven B. Jung, M. N. Rahaman, and Qiang Fu

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Effect of Borate Glass Composition on Its Conversion to Hydroxyapatite and on the Proliferation of MC3T3-E1 Cells, Roger F. Brown, M. N. Rahaman, Agatha B. Dwilewicz, Wen-Hai Huang, D. E. Day, Yadong Li, and B. Sonny Bal

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Spatial and Temporal Patterns in the Microbial Diversity of a Meromictic Soda Lake in Washington State, Pedro A. Dimitriu, Holly C. Pinkart, Brent M. Peyton, and Melanie R. Mormile

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Relative Influences of Historical and Contemporary Forces Shaping the Distribution of Genetic Variation in the Atlantic Killifish, Fundulus Heteroclitus, David D. Duvernell, James B. Lindmeier, Katherine E. Faust, and Andrew Namaka Whitehead

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Validation of an NSP-Based (Negative Selection Pattern) Gene Family Identification Strategy, Ronald L. Frank, Cyriac Kandoth, and Fikret Erçal

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Mechanical and in Vitro Performance of 13-93 Bioactive Glass Scaffolds Prepared by a Polymer Foam Replication Technique, Qiang Fu, M. N. Rahaman, B. Sonny Bal, Roger F. Brown, and D. E. Day

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Enhanced Wettability of an SU-8 Photoresist through a Photografting Procedure for Bioanalytical Device Applications, Zhan Gao, Chang-Soo Kim, and David Henthorn

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Process Development for Waveguide Chemical Sensors with Integrated Polymeric Sensitive Layers, Zhan Gao, Jongwon Park, Chang-Soo Kim, David Henthorn, and Raghu Ambekar

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Energy Uptake and Allocation during Ontogeny, Chen Hou, Wenyun Zuo, Melanie E. Moses, William H. Woodruff, James H. Brown, and Geoffrey B. West

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Zinc Oxide Nanoparticles Induce Oxidative Stress and Alter Calcium Homeostasis in Human Bronchial Epithelial Cells (BEAS-2B), Chuan-Chin Huang, Robert Aronstam, Da-Ren Chen, and Yue-Wern Huang

Automation of an NSP-based (negative Selection Pattern) Gene Family Identification Strategy, Cyriac Kandoth, Ronald L. Frank, and Fikret Erçal

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Dry Film Process Development for Electroplating and Lift-off of Metal Layers, Phaninder R. Kanikella, Matthew O'Keefe, and Chang-Soo Kim

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Cytotoxicity and Cell Membrane Depolarization Induced by Aluminum Oxide Nanoparticles in Human Lung Epithelial Cells A549, Weisheng Lin, Isaac Stayton, Yue-wern Huang, X.-D. Zhou, and Yinfa Ma

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Revisiting a Model of Ontogenetic Growth: Estimating Model Parameters from Theory and Data, Melanie E. Moses, Chen Hou, William H. Woodruff, Geoffrey B. West, Jeffery C. Nekola, Wenyun Zuo, and James H. Brown

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Systematic Monitoring of Potential Endocrine Disrupting Organic Contaminants in Northern and Southern Missouri Streams, Paul Ki-souk Nam, Chih-chin Liu, Mauricio E. Solis, Yue-Wern Huang, and Dev Niyogi

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The Mechanism of Elevated Toxicity in HepG2 Cells Due to Combined Exposure to Ethanol and Ionizing Radiation, Joshua Ogony, Richard H. Mathews, H. Anni, Katie Shannon, and Nuran Ercal

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Bioactive Borate Glass Coatings for Titanium Alloys, Laxmikanth Peddi, Richard K. Brow, and Roger F. Brown

Skeletal Development of the Vertebral Column in the Miniature Hylid Frog Acris Crepitans, with Comments on Vertebral Anomalies, Analia Pugener and Anne M. Maglia

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Reproductive Isolation among Endemic Pupfishes (Cyprinodon) on San Salvador Island, Bahamas: Microsatellite Evidence, Bruce J. Turner, David D. Duvernell, Thomas M. Bunt, and Michael G. Barton

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Fe(III), Cr(VI), and Fe(III) Mediated Cr(VI) Reduction in Alkaline Media Using a Halomonas Isolate from Soap Lake, Washington, Michael R. VanEngelen, Brent M. Peyton, Melanie R. Mormile, and Holly C. Pinkhart

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Tests of Reproductive Isolation among Species in the Fundulus Notatus (Cyprinodontiformes: Fundulidae) Species Complex, Patrick A. Vigueira, Jacob F. Schaefer, David D. Duvernell, and Brian R. Kreiser

Submissions from 2007

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Field Observations and Lab Tests of Acid Brines: Implications for Past Deposition, Diagenesis, Erosion, and Life on Mars, Kathleen Counter Benison, Brenda Beitler Bowen, R. M. Foster, Elliot A. Jagniecki, Deidre A. LaClair, J. Walker, M. M. Gonzales, M. C. Sirbescu, J. J. Student, Stacy L. Story, Francisca Oboh-Ikuenobe, BoYoung Hong, Melanie R. Mormile, M. Storrie-Lombardi, and S. S. Johnson

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Sedimentology of Acid Saline Lakes in Southern Western Australia: Newly Described Processes and Products of an Extreme Environment, Kathleen Counter Benison, Brenda Beitler Bowen, Francisca Oboh-Ikuenobe, Elliot A. Jagniecki, Deidre A. LaClair, Stacy L. Story, Melanie R. Mormile, and BoYoung Hong

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Hematite Concretions from Modern Acid Saline Lake Sediments as Geochemical and Astrobiological Tombs, Brenda Beitler Bowen, Kathleen C. Benison, Francisca Oboh-Ikuenobe, and Melanie R. Mormile

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Hybridization and Reproductive Isolation among Syntopic Populations of the Topminnows Fundulus Notatus and F. Olivaceus, David D. Duvernell, Jacob F. Schaefer, D. C. Hancks, J. A. Fonoti, and Andrew M. Ravanelli

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Identification of Saccharomyces Cerevisiae YPR1 as a Methylglyoxal Reducing Enzyme: Over-Expression Enhances Oxidative Stress Tolerance in E. Coli, Mei Firestone, Brad E. Rozema, Keith Earley, and Nathan Chen

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Adaptive Evolution of Metabolic Pathways in Drosophila, Jonathan M. Flowers, Efe Sezgin, Seiji Kumagai, David D. Duvernell, Luciano M. Matzkin, Paul S. Schmidt, and Walter F. Eanes

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Erratum: Adaptive Evolution of Metabolic Pathways in Drosophila (Molecular Biology and Evolution (2007) 24, (1347-1354)), Jonathan M. Flowers, Efe Sezgin, Seiji Kumagai, David D. Duvernell, Luciano M. Matzkin, Paul S. Schmidt, and Walter F. Eanes

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Post Bonding Modification of Microfluidic Channel Materials for the Manufacture of Bioanalytical Devices, Zhan Gao, Chang-Soo Kim, and David Henthorn

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Livestock Hormones in the Environment, Yue-Wern Huang and Janet M. Bandeff

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Oxidative Stress Induced in PCB-exposed Northern Leopard Frogs, Rana Pipiens, Yue-wern Huang, David J. Hoffman, and William H. Karasov

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Human Exposure to Medical, Dietary, and Environmental Estrogens, Yue-wern Huang, Jacob R. Phillips, and Loretta D. Hunter

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Atrazine Exposure and Breast Cancer Incidence: An Ecologic Study of Missouri Counties, Loretta D. Hunter, Gary L. Gadbury, and Yue-wern Huang

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Acquisition of Endonuclease Specificity during Evolution of L1 Retrotransposon, Kenji Ichiyanagi, Hidenori Nishihara, David D. Duvernell, and Norihiro Okada

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An Anatomical Ontology for Amphibians, Jennifer Leopold, Analia Pugener, Susan Gauch, and Anne M. Maglia

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Identifying Character Non-independence in Phylogenetic Data Using Parallelized Rule Induction from Coverings, Jennifer Leopold, Kumar Mayur Thakur, Bhagyesh Babubhai Patel, Fikret Erçal, and Anne M. Maglia