BioNetGen 2.2: Advances in Rule-Based Modeling
Abstract
Summary: BioNetGen is an open-source software package for rule-based modeling of complex biochemical systems. Version 2.2 of the software introduces numerous new features for both model specification and simulation. Here, we report on these additions, discussing how they facilitate the construction, simulation and analysis of larger and more complex models than previously possible.
Recommended Citation
L. A. Harris and J. S. Hogg and J. Tapia and J. A. Sekar and S. Gupta and I. Korsunsky and A. Arora and D. Barua and R. P. Sheehan and J. R. Faeder, "BioNetGen 2.2: Advances in Rule-Based Modeling," Bioinformatics, vol. 32, no. 21, pp. 3366 - 3368, Oxford University Press, Nov 2016.
The definitive version is available at https://doi.org/10.1093/bioinformatics/btw469
Department(s)
Chemical and Biochemical Engineering
Keywords and Phrases
Biochemistry; Computer Language; Human; Software; Theoretical Model, Biochemistry; Humans; Models, Theoretical; Programming Languages; Software
International Standard Serial Number (ISSN)
1367-4803
Document Type
Article - Journal
Document Version
Citation
File Type
text
Language(s)
English
Rights
© 2016 Oxford University Press, All rights reserved.
Publication Date
01 Nov 2016
PubMed ID
27402907
Comments
NIH grants P41 GM103712, R01 AI107825, R01 GM115805 and P01 HL114453 and NSF Expeditions in Computing Grant (award 0926181). JSH and RPS received support through T32 EB009403.