Title

BioNetGen 2.2: Advances in Rule-Based Modeling

Abstract

Summary: BioNetGen is an open-source software package for rule-based modeling of complex biochemical systems. Version 2.2 of the software introduces numerous new features for both model specification and simulation. Here, we report on these additions, discussing how they facilitate the construction, simulation and analysis of larger and more complex models than previously possible.

Department(s)

Chemical and Biochemical Engineering

Comments

NIH grants P41 GM103712, R01 AI107825, R01 GM115805 and P01 HL114453 and NSF Expeditions in Computing Grant (award 0926181). JSH and RPS received support through T32 EB009403.

Keywords and Phrases

Biochemistry; Computer Language; Human; Software; Theoretical Model, Biochemistry; Humans; Models, Theoretical; Programming Languages; Software

International Standard Serial Number (ISSN)

1367-4803

Document Type

Article - Journal

Document Version

Citation

File Type

text

Language(s)

English

Rights

© 2016 Oxford University Press, All rights reserved.

PubMed ID

27402907

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